RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g19924.1 View Network Show in Genome Browser |
| Other Names | Os02g0302200 |
| Description | aminotransferase, classes I and II, domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 11716855-11736546 Nucleotide Length: 1284 |
| Protein-coding | LOC_Os02g19924 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g08770 LOC_Os02g14110 LOC_Os01g70380 LOC_Os01g70370 LOC_Os01g70360 LOC_Os01g53450 LOC_Os02g07160 LOC_Os02g07490 |
| Downstream Genes | LOC_Os06g35540 LOC_Os10g42090 LOC_Os02g56300 LOC_Os10g11200 LOC_Os03g14800 LOC_Os11g31640 LOC_Os10g41150 LOC_Os06g19730 LOC_Os02g41670 LOC_Os02g41680 LOC_Os05g35290 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00270 rn01100 rn01110 rn00130 rn00350 rn00400 rn00401 rn00950 rn00360 rn00960 rn01210 rn00920 rn00340 |
| Metacyc Pathways | ETHYL-PWY PWY-4361 TYRFUMCAT-PWY PWY-5079 PHESYN PWY-702 HOMOSER-METSYN-PWY PWY-801 HISTSYN-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g19924.1 |
| Rice Genome Annotation | LOC_Os02g19924.1 |
| Ricechip | LOC_Os02g19924.1 |
| KEGG | osa:4329097 dosa:Os02t0302200-01 |
| Entrez-Gene | 4329097 |