RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os02g19970.1 View Network Show in Genome Browser
Other Names	Os02g0302700
Description	aminotransferase, classes I and II, domain containing protein, expressed
Gene Attributes	Chromosome: Chr2 CDS Coordinates (5'-3'): 11749120-11753786 Nucleotide Length: 1320
Protein-coding	LOC_Os02g19970

Gene Ontology Classification
GO	Name	Type	Code
GO:0009056	catabolic process	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0016740	transferase activity	Molecular Function	IEA
GO:0005829	cytosol	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os02g07160 LOC_Os02g07490 LOC_Os01g08770 LOC_Os02g14110 LOC_Os01g53450 LOC_Os01g70380 LOC_Os01g70370 LOC_Os01g70360 LOC_Os01g04660 LOC_Os02g02700 LOC_Os01g46980 More..
Downstream Genes	LOC_Os06g19730 LOC_Os02g41670 LOC_Os02g41680 LOC_Os05g35290 LOC_Os04g43800 LOC_Os02g41650 LOC_Os06g15420 LOC_Os05g24550 LOC_Os08g22354 LOC_Os04g42600 LOC_Os06g35540 More..

miRNA Regulations
miRNAs	osa-miR169e osa-miR169n osa-miR169o

Pathways
KEGG Pathways	rn00270 rn01100 rn01110 rn00130 rn00350 rn00400 rn00401 rn00950 rn00360 rn00960 rn01210 rn00920 rn00340
Metacyc Pathways	ETHYL-PWY PWY-4361 TYRFUMCAT-PWY PWY-5079 PHESYN PWY-702 HOMOSER-METSYN-PWY PWY-801 HISTSYN-PWY

Reference
PubMed	18034312

Database Links
Gramene	LOC_Os02g19970.1
Rice Genome Annotation	LOC_Os02g19970.1
Ricechip	LOC_Os02g19970.1
KEGG	osa:4329101 dosa:Os02t0302700-01
Entrez-Gene	4329101