RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g25870.1 View Network Show in Genome Browser |
| Other Names | Os02g0456500 |
| Description | elongation factor Tu, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 15155177-15160626 Nucleotide Length: 1116 |
| Protein-coding | LOC_Os02g25870 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0008135 | translation factor activity, nucleic acid binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g71270 LOC_Os01g27630 LOC_Os01g04730 LOC_Os01g53900 LOC_Os01g61814 LOC_Os01g52470 LOC_Os01g27390 LOC_Os01g25484 LOC_Os02g13530 LOC_Os01g16890 LOC_Os01g55830 More.. |
| Downstream Genes | LOC_Os07g32570 LOC_Os03g14530 LOC_Os10g08930 LOC_Os11g41650 LOC_Os07g38560 LOC_Os03g10500 LOC_Os06g04290 LOC_Os07g39870 LOC_Os03g49580 LOC_Os04g02820 LOC_Os02g32030 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g25870.1 |
| Rice Genome Annotation | LOC_Os02g25870.1 |
| Ricechip | LOC_Os02g25870.1 |
| KEGG | dosa:Os02t0456500-01 |