RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g29464.1 View Network Show in Genome Browser |
| Other Names | Os02g0497500 |
| Description | RecF/RecN/SMC N terminal domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 17489974-17507786 Nucleotide Length: 3951 |
| Protein-coding | LOC_Os02g29464 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0004518 | nuclease activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g01689 LOC_Os02g05330 LOC_Os01g62290 LOC_Os01g48420 LOC_Os02g04490 LOC_Os01g46380 LOC_Os01g14950 LOC_Os01g05670 LOC_Os01g08970 LOC_Os01g25370 LOC_Os01g18670 More.. |
| Downstream Genes | LOC_Os04g54340 LOC_Os07g48720 LOC_Os09g03370 LOC_Os05g43610 LOC_Os04g39280 LOC_Os03g22880 LOC_Os02g58020 LOC_Os08g08030 LOC_Os05g51790 LOC_Os02g38920 LOC_Os12g25120 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5519 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g29464.1 |
| Rice Genome Annotation | LOC_Os02g29464.1 |
| Ricechip | LOC_Os02g29464.1 |
| KEGG | osa:4329409 dosa:Os02t0497500-02 |
| Entrez-Gene | 4329409 |