RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os02g30800.1 View Network Show in Genome Browser
Other Names	Os02g0511901,Os02g0511900
Description	POLE1 - Putative DNA polymerase epsilon catalytic subunit, expressed
Gene Attributes	Chromosome: Chr2 CDS Coordinates (5'-3'): 18348888-18370959 Nucleotide Length: 6861
Protein-coding	LOC_Os02g30800

Gene Ontology Classification
GO	Name	Type	Code
GO:0007049	cell cycle	Biological Process	IEA
GO:0007049	cell cycle	Biological Process	IEA
GO:0009790	embryo development	Biological Process	IEA
GO:0009790	embryo development	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0009791	post-embryonic development	Biological Process	IEA
GO:0009791	post-embryonic development	Biological Process	IEA
GO:0000003	reproduction	Biological Process	IEA
GO:0000003	reproduction	Biological Process	IEA
GO:0009628	response to abiotic stimulus	Biological Process	IEA
GO:0009628	response to abiotic stimulus	Biological Process	IEA
GO:0005488	binding	Molecular Function	IEA
GO:0005488	binding	Molecular Function	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0003677	DNA binding	Molecular Function	IEA
GO:0003676	nucleic acid binding	Molecular Function	IEA
GO:0003676	nucleic acid binding	Molecular Function	IEA
GO:0000166	nucleotide binding	Molecular Function	IEA
GO:0000166	nucleotide binding	Molecular Function	IEA
GO:0016740	transferase activity	Molecular Function	IEA
GO:0016740	transferase activity	Molecular Function	IEA
GO:0005576	extracellular region	Cellular Component	IEA
GO:0005576	extracellular region	Cellular Component	IEA
GO:0005634	nucleus	Cellular Component	IEA
GO:0005634	nucleus	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os01g64820 LOC_Os01g36390 LOC_Os02g20430 LOC_Os01g63710 LOC_Os01g49010 LOC_Os01g49680 LOC_Os02g03340 LOC_Os01g48210 LOC_Os02g01560 LOC_Os01g25610 LOC_Os02g27760 More..
Downstream Genes	LOC_Os05g06840 LOC_Os11g08330 LOC_Os02g56130 LOC_Os02g55410 LOC_Os12g37400 LOC_Os12g03130 LOC_Os11g03430 LOC_Os11g29380 LOC_Os12g07720 LOC_Os07g22400 LOC_Os05g29010 More..

miRNA Regulations
miRNAs	osa-miR1436 osa-miR5809

Pathways
KEGG Pathways	rn00240 rn01100 rn00230

Database Links
Gramene	LOC_Os02g30800.1
Rice Genome Annotation	LOC_Os02g30800.1
Ricechip	LOC_Os02g30800.1
KEGG	osa:4329458 dosa:Os02t0511901-00 dosa:Os02t0511900-00
Entrez-Gene	4340412