RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g33500.1 View Network Show in Genome Browser |
| Other Names | Os02g0538000 |
| Description | threonyl-tRNA synthetase, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 19924354-19928340 Nucleotide Length: 2025 |
| Protein-coding | LOC_Os02g33500 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g01110 LOC_Os01g53280 LOC_Os01g03030 LOC_Os01g03660 LOC_Os01g54540 LOC_Os01g72800 |
| Downstream Genes | LOC_Os02g55120 LOC_Os06g43900 LOC_Os12g34860 LOC_Os05g48510 LOC_Os05g45220 LOC_Os05g05840 LOC_Os10g10244 LOC_Os06g13660 LOC_Os03g31150 LOC_Os08g42560 LOC_Os10g42860 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 |
| Metacyc Pathways | TRNA-CHARGING-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g33500.1 |
| Rice Genome Annotation | LOC_Os02g33500.1 |
| Ricechip | LOC_Os02g33500.1 |
| KEGG | osa:4329580 dosa:Os02t0538000-01 |
| Entrez-Gene | 4329580 |