RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g33680.1 View Network Show in Genome Browser |
| Other Names | Os02g0540700 |
| Description | U-box domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 20082159-20083676 Nucleotide Length: 1518 |
| Protein-coding | LOC_Os02g33680 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g21040 LOC_Os02g09980 LOC_Os02g09990 LOC_Os01g70790 LOC_Os02g31100 LOC_Os01g56200 LOC_Os02g09970 LOC_Os01g63690 LOC_Os01g57470 |
| Downstream Genes | LOC_Os05g27730 LOC_Os03g44380 LOC_Os04g46240 LOC_Os02g43820 LOC_Os03g18910 LOC_Os09g25760 LOC_Os09g29310 LOC_Os03g18150 LOC_Os12g42280 LOC_Os04g46250 LOC_Os06g13080 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5809 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g33680.1 |
| Rice Genome Annotation | LOC_Os02g33680.1 |
| Ricechip | LOC_Os02g33680.1 |
| KEGG | osa:4329591 dosa:Os02t0540700-00 |
| Entrez-Gene | 4329591 |