RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os02g33850.1 View Network Show in Genome Browser
Other Names	Os02g0543300
Description	elongation factor Tu family protein, putative, expressed
Gene Attributes	Chromosome: Chr2 CDS Coordinates (5'-3'): 20179013-20182030 Nucleotide Length: 3018
Protein-coding	LOC_Os02g33850

Gene Ontology Classification
GO	Name	Type	Code
GO:0008150	biological_process	Biological Process	IEA
GO:0009056	catabolic process	Biological Process	IEA
GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	Biological Process	IEA
GO:0006412	translation	Biological Process	IEA
GO:0016787	hydrolase activity	Molecular Function	IEA
GO:0000166	nucleotide binding	Molecular Function	IEA
GO:0008135	translation factor activity, nucleic acid binding	Molecular Function	IEA
GO:0005829	cytosol	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os02g16709 LOC_Os01g65730 LOC_Os01g68120 LOC_Os01g08200 LOC_Os01g54030 LOC_Os02g18830 LOC_Os01g59140 LOC_Os01g34200 LOC_Os01g10820 LOC_Os02g15610 LOC_Os02g14059 More..
Downstream Genes	LOC_Os03g55640 LOC_Os09g28000 LOC_Os05g49220 LOC_Os08g10649 LOC_Os08g01620 LOC_Os09g14610 LOC_Os02g44810 LOC_Os03g02970 LOC_Os11g29190 LOC_Os03g38740 LOC_Os12g41400 More..

miRNA Regulations
miRNAs	osa-miR1428e-5p osa-miR1428f-5p osa-miR1428g-5p

Pathways
KEGG Pathways	rn00230

Database Links
Gramene	LOC_Os02g33850.1
Rice Genome Annotation	LOC_Os02g33850.1
Ricechip	LOC_Os02g33850.1
KEGG	osa:4329604 dosa:Os02t0543300-00
Entrez-Gene	4329604