RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g34560.1 View Network Show in Genome Browser |
| Other Names | Os02g0550600 |
| Description | plant neutral invertase domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 20717887-20721920 Nucleotide Length: 1689 |
| Protein-coding | LOC_Os02g34560 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g07500 LOC_Os01g12090 LOC_Os01g28450 |
| Downstream Genes | LOC_Os10g28420 LOC_Os02g57660 LOC_Os03g18910 LOC_Os10g19880 LOC_Os06g35470 LOC_Os03g52390 LOC_Os04g43560 LOC_Os05g45270 LOC_Os08g34130 LOC_Os12g07650 LOC_Os05g07720 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2919 osa-miR166e-3p osa-miR2924 |
| Pathways | |
|---|---|
| Metacyc Pathways | SUCUTIL-PWY |
| Reference | |
|---|---|
| PubMed | 18317796 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g34560.1 |
| Rice Genome Annotation | LOC_Os02g34560.1 |
| Ricechip | LOC_Os02g34560.1 |
| KEGG | osa:4329626 dosa:Os02t0550600-01 |
| Entrez-Gene | 4329626 |