RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g34810.1 View Network Show in Genome Browser |
| Other Names | Os02g0553200 |
| Description | OsAPx8 - Thylakoid-bound Ascorbate Peroxidase encoding gene 5,8, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 20868260-20872079 Nucleotide Length: 1437 |
| Protein-coding | LOC_Os02g34810 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g70400 LOC_Os01g28540 LOC_Os01g37590 LOC_Os02g03720 LOC_Os01g68450 LOC_Os01g65460 LOC_Os01g55740 LOC_Os01g69060 LOC_Os02g28810 |
| Downstream Genes | LOC_Os03g36750 LOC_Os03g39830 LOC_Os12g23180 LOC_Os04g55180 LOC_Os07g37830 LOC_Os02g51570 LOC_Os03g14040 LOC_Os12g08730 LOC_Os05g01950 LOC_Os05g28090 LOC_Os03g50810 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00053 rn00480 |
| Metacyc Pathways | PWY-5461 PWY-2261 |
| Reference | |
|---|---|
| PubMed | 17916638 22196946 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g34810.1 |
| Rice Genome Annotation | LOC_Os02g34810.1 |
| Ricechip | LOC_Os02g34810.1 |
| KEGG | osa:4329643 dosa:Os02t0553200-01 |
| Entrez-Gene | 4329643 |