RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g35150.1 View Network Show in Genome Browser |
| Other Names | Os02g0557500 |
| Description | splicing factor U2AF, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 21110728-21116484 Nucleotide Length: 2037 |
| Protein-coding | LOC_Os02g35150 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g15350 LOC_Os01g34190 LOC_Os01g73550 LOC_Os01g47750 |
| Downstream Genes | LOC_Os12g01190 LOC_Os11g28270 LOC_Os12g21700 LOC_Os11g41820 LOC_Os08g37960 LOC_Os05g48960 LOC_Os07g47630 LOC_Os11g45590 LOC_Os06g21390 LOC_Os03g22380 LOC_Os05g30140 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR415 osa-miR2876-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g35150.1 |
| Rice Genome Annotation | LOC_Os02g35150.1 |
| Ricechip | LOC_Os02g35150.1 |
| KEGG | osa:4329674 dosa:Os02t0557500-01 |
| Entrez-Gene | 4329674 |