RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g38200.1 View Network Show in Genome Browser |
| Other Names | Os02g0595500 |
| Description | dehydrogenase, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 23106931-23110390 Nucleotide Length: 1137 |
| Protein-coding | LOC_Os02g38200 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g16900 LOC_Os01g46610 LOC_Os02g10070 LOC_Os01g14580 LOC_Os01g46070 LOC_Os02g32490 LOC_Os01g59740 LOC_Os01g58730 LOC_Os01g22520 LOC_Os01g68324 LOC_Os02g08364 More.. |
| Downstream Genes | LOC_Os05g49760 LOC_Os04g42920 LOC_Os08g09200 LOC_Os11g33240 LOC_Os07g12890 LOC_Os04g58090 LOC_Os03g45320 LOC_Os03g04410 LOC_Os06g27890 LOC_Os07g07550 LOC_Os04g40850 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2104 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00290 rn01100 rn01110 rn01210 rn00020 rn01120 rn00480 rn00720 |
| Metacyc Pathways | LEUSYN-PWY PWY-6549 PWY-5690 TCA ANARESP1-PWY P105-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g38200.1 |
| Rice Genome Annotation | LOC_Os02g38200.1 |
| Ricechip | LOC_Os02g38200.1 |
| KEGG | osa:4329858 dosa:Os02t0595500-01 |
| Entrez-Gene | 4329858 |