RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g38210.1 View Network Show in Genome Browser |
| Other Names | Os02g0595700 |
| Description | elongation factor Tu, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 23111937-23113929 Nucleotide Length: 1404 |
| Protein-coding | LOC_Os02g38210 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0008135 | translation factor activity, nucleic acid binding | Molecular Function | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g61814 LOC_Os01g14830 LOC_Os02g04460 LOC_Os01g47330 LOC_Os02g24614 LOC_Os01g42980 LOC_Os01g64090 LOC_Os02g21660 LOC_Os01g15290 LOC_Os02g30050 LOC_Os02g05880 More.. |
| Downstream Genes | LOC_Os03g10060 LOC_Os04g45490 LOC_Os03g36780 LOC_Os11g29190 LOC_Os03g60400 LOC_Os03g14530 LOC_Os10g08930 LOC_Os12g33240 LOC_Os06g34780 LOC_Os06g04290 LOC_Os10g32870 More.. |
| Reference | |
|---|---|
| PubMed | 19232310 17498631 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g38210.1 |
| Rice Genome Annotation | LOC_Os02g38210.1 |
| Ricechip | LOC_Os02g38210.1 |
| KEGG | osa:9270837 dosa:Os02t0595700-01 |
| Entrez-Gene | 9270837 |