RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g38300.1 View Network Show in Genome Browser |
| Other Names | Os02g0596500 |
| Description | SNF7 domain containing protein, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 23159765-23163343 Nucleotide Length: 687 |
| Protein-coding | LOC_Os02g38300 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005768 | endosome | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g46932 LOC_Os01g01350 LOC_Os01g18280 LOC_Os01g57260 LOC_Os02g04160 LOC_Os02g08364 LOC_Os01g59790 LOC_Os01g59800 LOC_Os01g16030 LOC_Os01g51170 LOC_Os02g06490 More.. |
| Downstream Genes | LOC_Os07g29630 LOC_Os03g01810 LOC_Os07g13270 LOC_Os05g01250 LOC_Os09g09480 LOC_Os06g43590 LOC_Os10g33660 LOC_Os03g43860 LOC_Os03g08770 LOC_Os06g40620 LOC_Os11g47710 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2878-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g38300.1 |
| Rice Genome Annotation | LOC_Os02g38300.1 |
| Ricechip | LOC_Os02g38300.1 |
| KEGG | osa:4329866 dosa:Os02t0596500-01 |
| Entrez-Gene | 4329866 |