RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g39160.1 View Network Show in Genome Browser |
| Other Names | Os02g0603800 |
| Description | hydroxymethylbutenyl 4-diphosphate synthase, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 23653299-23659174 Nucleotide Length: 2235 |
| Protein-coding | LOC_Os02g39160 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g45370 LOC_Os01g74190 LOC_Os02g35700 LOC_Os01g73450 LOC_Os02g06640 LOC_Os01g55360 LOC_Os02g24612 |
| Downstream Genes | LOC_Os03g10520 LOC_Os03g38230 LOC_Os12g36194 LOC_Os07g30970 LOC_Os07g38300 LOC_Os10g41410 LOC_Os05g51700 LOC_Os04g33300 LOC_Os09g16910 LOC_Os10g17990 LOC_Os04g41300 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2104 osa-miR5488 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00900 rn01100 rn01110 |
| Metacyc Pathways | NONMEVIPP-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g39160.1 |
| Rice Genome Annotation | LOC_Os02g39160.1 |
| Ricechip | LOC_Os02g39160.1 |
| KEGG | osa:4329911 dosa:Os02t0603800-01 |
| Entrez-Gene | 4329911 |