RiceNetDB

RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.

General Information
Locus Name	LOC_Os02g39570.1 View Network Show in Genome Browser
Other Names	Os02g0608550,Os02g0608600
Description	ACT domain containing protein, expressed
Gene Attributes	Chromosome: Chr2 CDS Coordinates (5'-3'): 23885607-23890742 Nucleotide Length: 1455
Protein-coding	LOC_Os02g39570

Gene Ontology Classification
GO	Name	Type	Code
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009058	biosynthetic process	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0009987	cellular process	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0008152	metabolic process	Biological Process	IEA
GO:0005488	binding	Molecular Function	IEA
GO:0005488	binding	Molecular Function	IEA
GO:0016740	transferase activity	Molecular Function	IEA
GO:0016740	transferase activity	Molecular Function	IEA
GO:0009536	plastid	Cellular Component	IEA
GO:0009536	plastid	Cellular Component	IEA

Regulatory Genes ( Show Network In Viewer )
Upstream Genes	LOC_Os02g30630 LOC_Os01g46380 LOC_Os02g05780 LOC_Os01g32080 LOC_Os01g70300 LOC_Os01g38970 LOC_Os01g59150 LOC_Os01g18050 LOC_Os02g07870 LOC_Os02g07060 LOC_Os01g62840 More..
Downstream Genes	LOC_Os04g32010 LOC_Os04g31960 LOC_Os05g49800 LOC_Os06g51280 LOC_Os09g20530 LOC_Os12g04440 LOC_Os11g04670 LOC_Os10g30970 LOC_Os10g33980 LOC_Os08g34720 LOC_Os07g20544 More..

miRNA Regulations
miRNAs	osa-miR5809

Pathways
KEGG Pathways	rn00290 rn00660 rn01100 rn01110 rn01210 rn00770 rn00650
Metacyc Pathways	VALSYN-PWY ILEUSYN-PWY PWY-5938 PWY-5939 PWY-6389 PWY-5101 PWY-5103 PWY-5104

Database Links
Gramene	LOC_Os02g39570.1
Rice Genome Annotation	LOC_Os02g39570.1
Ricechip	LOC_Os02g39570.1
KEGG	osa:4329938 dosa:Os02t0608550-00 dosa:Os02t0608600-01
Entrez-Gene	4341844