RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g39570.6 View Network Show in Genome Browser |
| Other Names | Os02g0608600 |
| Description | ACT domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 23886678-23890742 Nucleotide Length: 972 |
| Protein-coding | LOC_Os02g39570 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g30630 LOC_Os01g46380 LOC_Os02g05780 LOC_Os01g32080 LOC_Os01g70300 LOC_Os01g38970 LOC_Os01g59150 LOC_Os01g18050 LOC_Os02g07870 LOC_Os02g07060 LOC_Os01g62840 More.. |
| Downstream Genes | LOC_Os04g32010 LOC_Os04g31960 LOC_Os05g49800 LOC_Os06g51280 LOC_Os09g20530 LOC_Os12g04440 LOC_Os11g04670 LOC_Os10g30970 LOC_Os10g33980 LOC_Os08g34720 LOC_Os07g20544 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1879 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00290 rn00660 rn01100 rn01110 rn01210 rn00770 rn00650 |
| Metacyc Pathways | VALSYN-PWY ILEUSYN-PWY PWY-5938 PWY-5939 PWY-6389 PWY-5101 PWY-5103 PWY-5104 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g39570.6 |
| Rice Genome Annotation | LOC_Os02g39570.6 |
| Ricechip | LOC_Os02g39570.6 |
| KEGG | osa:4329938 dosa:Os02t0608600-01 |
| Entrez-Gene | 4329938 |