RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g40010.1 View Network Show in Genome Browser |
| Other Names | Os02g0613900 |
| Description | phosphoribosyl transferase, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 24223305-24228766 Nucleotide Length: 717 |
| Protein-coding | LOC_Os02g40010 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g55820 LOC_Os01g65260 LOC_Os01g72240 LOC_Os01g56620 LOC_Os02g03540 LOC_Os01g72250 LOC_Os01g49290 LOC_Os01g48770 LOC_Os01g53070 LOC_Os01g67134 LOC_Os02g27760 More.. |
| Downstream Genes | LOC_Os03g30830 LOC_Os08g23730 LOC_Os05g35580 LOC_Os05g08950 LOC_Os07g40940 LOC_Os11g34350 LOC_Os05g43690 LOC_Os06g41360 LOC_Os02g50350 LOC_Os05g06920 LOC_Os07g30250 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00230 rn01100 |
| Metacyc Pathways | P1-PWY SALVADEHYPOX-PWY PWY-5043 P121-PWY PWY-6605 PWY-6610 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g40010.1 |
| Rice Genome Annotation | LOC_Os02g40010.1 |
| Ricechip | LOC_Os02g40010.1 |
| KEGG | osa:4329972 dosa:Os02t0613900-02 |
| Entrez-Gene | 4329972 |