RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g40460.1 View Network Show in Genome Browser |
| Other Names | Os02g0617700 |
| Description | S1 RNA binding domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 24531291-24534829 Nucleotide Length: 1128 |
| Protein-coding | LOC_Os02g40460 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0004518 | nuclease activity | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0003723 | RNA binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g40150 LOC_Os01g40170 LOC_Os02g39720 LOC_Os02g05660 LOC_Os01g24090 LOC_Os01g36920 LOC_Os01g36890 LOC_Os01g39250 LOC_Os02g05330 LOC_Os02g14929 LOC_Os01g40820 More.. |
| Downstream Genes | LOC_Os02g55940 LOC_Os06g07896 LOC_Os03g25450 LOC_Os09g34010 LOC_Os06g04610 LOC_Os05g01750 LOC_Os05g49970 LOC_Os04g48700 LOC_Os07g44190 LOC_Os03g10370 LOC_Os12g34550 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g40460.1 |
| Rice Genome Annotation | LOC_Os02g40460.1 |
| Ricechip | LOC_Os02g40460.1 |
| KEGG | osa:4329995 dosa:Os02t0617700-01 |
| Entrez-Gene | 4329995 |