RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g40830.1 View Network Show in Genome Browser |
| Other Names | Os02g0621700 |
| Description | succinyl-CoA ligase beta-chain, mitochondrial precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 24741749-24747965 Nucleotide Length: 1269 |
| Protein-coding | LOC_Os02g40830 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g19450 LOC_Os02g31040 LOC_Os01g10280 LOC_Os01g22520 LOC_Os02g36960 LOC_Os01g57570 LOC_Os01g61380 LOC_Os01g23610 LOC_Os02g03100 LOC_Os01g46070 LOC_Os01g16900 More.. |
| Downstream Genes | LOC_Os07g38970 LOC_Os04g32330 LOC_Os07g49520 LOC_Os04g32020 LOC_Os07g04240 LOC_Os06g15990 LOC_Os08g02640 LOC_Os09g20440 LOC_Os05g06750 LOC_Os11g47330 LOC_Os06g25439 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00230 rn01100 rn01110 |
| Metacyc Pathways | DENOVOPURINE2-PWY PWY-841 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g40830.1 |
| Rice Genome Annotation | LOC_Os02g40830.1 |
| Ricechip | LOC_Os02g40830.1 |
| KEGG | osa:4330016 dosa:Os02t0621700-01 |
| Entrez-Gene | 4330016 |