RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g41470.3 View Network Show in Genome Browser |
| Other Names | Os02g0623500 |
| Description | tRNA synthetases class II domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 24848175-24860095 Nucleotide Length: 1761 |
| Protein-coding | LOC_Os02g41470 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g16152 LOC_Os01g58470 LOC_Os01g32730 LOC_Os01g69120 LOC_Os01g72800 LOC_Os01g66379 LOC_Os01g62500 LOC_Os01g55260 |
| Downstream Genes | LOC_Os03g19300 LOC_Os03g25130 LOC_Os02g42230 LOC_Os11g41910 LOC_Os05g31160 LOC_Os02g53680 LOC_Os03g11540 LOC_Os09g38420 LOC_Os02g51830 LOC_Os03g15870 LOC_Os03g56840 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g41470.3 |
| Rice Genome Annotation | LOC_Os02g41470.3 |
| Ricechip | LOC_Os02g41470.3 |
| KEGG | osa:4330025 dosa:Os02t0623500-01 |
| Entrez-Gene | 4330025 |