RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g42230.1 View Network Show in Genome Browser |
| Other Names | Os02g0633400 |
| Description | RPA2B - Putative single-stranded DNA binding complex subunit 2, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 25404409-25408368 Nucleotide Length: 897 |
| Protein-coding | LOC_Os02g42230 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g48420 LOC_Os02g38840 LOC_Os02g11050 LOC_Os01g16146 LOC_Os01g06020 LOC_Os01g47340 LOC_Os02g41470 LOC_Os01g27520 LOC_Os01g59600 LOC_Os01g56670 LOC_Os02g16550 More.. |
| Downstream Genes | LOC_Os02g53680 LOC_Os05g46270 LOC_Os04g49860 LOC_Os02g46130 LOC_Os05g29010 LOC_Os06g07210 LOC_Os05g02040 LOC_Os06g50910 LOC_Os05g49300 LOC_Os03g38980 LOC_Os06g09290 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2102-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g42230.1 |
| Rice Genome Annotation | LOC_Os02g42230.1 |
| Ricechip | LOC_Os02g42230.1 |
| KEGG | osa:4330068 dosa:Os02t0633400-01 |
| Entrez-Gene | 4330068 |