RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g42330.1 View Network Show in Genome Browser |
| Other Names | Os02g0635000 |
| Description | nitrilase, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 25459397-25462730 Nucleotide Length: 1074 |
| Protein-coding | LOC_Os02g42330 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g43844 LOC_Os02g35310 LOC_Os02g33140 LOC_Os02g06700 LOC_Os01g05840 LOC_Os01g27230 LOC_Os02g36190 LOC_Os02g36150 LOC_Os01g43750 LOC_Os02g32770 LOC_Os01g43774 More.. |
| Downstream Genes | LOC_Os06g11280 LOC_Os06g11240 LOC_Os06g11210 LOC_Os04g39210 LOC_Os06g11200 LOC_Os06g11290 LOC_Os07g44140 LOC_Os07g44110 LOC_Os07g11870 LOC_Os06g09210 LOC_Os12g31830 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5511 |
| Pathways | |
|---|---|
| KEGG Pathways | rn00460 rn00627 rn01120 rn00643 rn00380 rn00910 rn01100 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g42330.1 |
| Rice Genome Annotation | LOC_Os02g42330.1 |
| Ricechip | LOC_Os02g42330.1 |
| KEGG | osa:4330076 dosa:Os02t0635000-01 |
| Entrez-Gene | 4330076 |