RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g45660.1 View Network Show in Genome Browser |
| Other Names | Os02g0680600 |
| Description | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 27773366-27775510 Nucleotide Length: 828 |
| Protein-coding | LOC_Os02g45660 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0005975 | carbohydrate metabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g66360 LOC_Os01g56620 LOC_Os01g51280 LOC_Os01g56560 LOC_Os01g56310 LOC_Os01g46570 LOC_Os02g10830 LOC_Os01g43020 LOC_Os01g52260 LOC_Os02g12400 LOC_Os01g37000 More.. |
| Downstream Genes | LOC_Os07g10460 LOC_Os04g44890 LOC_Os04g40540 LOC_Os08g44280 LOC_Os06g49870 LOC_Os03g15950 LOC_Os04g38330 LOC_Os12g36950 LOC_Os03g51790 LOC_Os10g08550 LOC_Os09g20820 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00900 rn01100 rn01110 |
| Metacyc Pathways | NONMEVIPP-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g45660.1 |
| Rice Genome Annotation | LOC_Os02g45660.1 |
| Ricechip | LOC_Os02g45660.1 |
| KEGG | osa:4330320 dosa:Os02t0680600-01 |
| Entrez-Gene | 4330320 |