RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
General Information | |
---|---|
Locus Name | LOC_Os02g46130.1 View Network Show in Genome Browser |
Other Names | Os02g0686400 |
Description | tRNA synthetases class II domain containing protein, expressed |
Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 28113604-28118991 Nucleotide Length: 1650 |
Protein-coding | LOC_Os02g46130 |
Gene Ontology Classification | ||||
---|---|---|---|---|
GO | Name | Type | Code | |
GO:0008150 | biological_process | Biological Process | IEA | |
GO:0008152 | metabolic process | Biological Process | IEA | |
GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
GO:0006412 | translation | Biological Process | IEA | |
GO:0003824 | catalytic activity | Molecular Function | IEA | |
GO:0003676 | nucleic acid binding | Molecular Function | IEA | |
GO:0000166 | nucleotide binding | Molecular Function | IEA | |
GO:0005737 | cytoplasm | Cellular Component | IEA | |
GO:0005829 | cytosol | Cellular Component | IEA |
Regulatory Genes ( Show Network In Viewer ) | |
---|---|
Upstream Genes | LOC_Os02g42230 LOC_Os01g37837 LOC_Os01g08770 LOC_Os01g49290 LOC_Os02g39830 LOC_Os02g33140 LOC_Os01g10820 LOC_Os01g23620 LOC_Os01g62840 LOC_Os01g38970 LOC_Os02g01560 More.. |
Downstream Genes | LOC_Os03g25130 LOC_Os02g53680 LOC_Os03g38980 LOC_Os03g21550 LOC_Os09g30412 LOC_Os09g30418 LOC_Os08g39070 LOC_Os08g39140 LOC_Os02g56300 LOC_Os03g11540 LOC_Os10g11200 More.. |
Pathways | |
---|---|
KEGG Pathways | rn00970 |
Metacyc Pathways | TRNA-CHARGING-PWY |
Database Links | |
---|---|
Gramene | LOC_Os02g46130.1 |
Rice Genome Annotation | LOC_Os02g46130.1 |
Ricechip | LOC_Os02g46130.1 |
KEGG | osa:4330354 dosa:Os02t0686400-01 |
Entrez-Gene | 4330354 |