RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g47020.1 View Network Show in Genome Browser |
| Other Names | Os02g0698000 |
| Description | phosphoribulokinase/Uridine kinase family protein, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 28701804-28704409 Nucleotide Length: 1212 |
| Protein-coding | LOC_Os02g47020 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009579 | thylakoid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g31690 LOC_Os02g10390 LOC_Os02g01340 LOC_Os01g46380 LOC_Os02g01150 LOC_Os02g06640 LOC_Os01g52170 LOC_Os02g38210 LOC_Os02g09590 |
| Downstream Genes | LOC_Os06g01850 LOC_Os04g41340 LOC_Os11g47970 LOC_Os11g13890 LOC_Os03g03720 LOC_Os07g37030 LOC_Os06g21210 LOC_Os06g15400 LOC_Os04g33830 LOC_Os12g19470 LOC_Os12g19381 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR172d-5p |
| Pathways | |
|---|---|
| KEGG Pathways | rn00710 rn01100 rn01120 rn00240 |
| Metacyc Pathways | CALVIN-PWY PWY0-163 P1-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g47020.1 |
| Rice Genome Annotation | LOC_Os02g47020.1 |
| Ricechip | LOC_Os02g47020.1 |
| KEGG | osa:4330413 dosa:Os02t0698000-01 |
| Entrez-Gene | 4330413 |