RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g47150.1 View Network Show in Genome Browser |
| Other Names | Os02g0699700 |
| Description | DNA topoisomerase 2, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 28777004-28784587 Nucleotide Length: 4578 |
| Protein-coding | LOC_Os02g47150 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g03060 LOC_Os02g10020 LOC_Os02g36974 LOC_Os02g26850 LOC_Os01g16650 LOC_Os01g08970 LOC_Os01g33030 LOC_Os01g42040 LOC_Os01g67134 LOC_Os01g61810 LOC_Os01g54420 More.. |
| Downstream Genes | LOC_Os07g32480 LOC_Os04g25550 LOC_Os08g05840 LOC_Os05g38820 LOC_Os07g32390 LOC_Os05g02670 LOC_Os04g47580 LOC_Os12g31810 LOC_Os04g38870 LOC_Os07g02350 LOC_Os08g33100 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR815a osa-miR815b osa-miR815c osa-miR2864.1 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g47150.1 |
| Rice Genome Annotation | LOC_Os02g47150.1 |
| Ricechip | LOC_Os02g47150.1 |
| KEGG | osa:4330426 dosa:Os02t0699700-01 |
| Entrez-Gene | 4330426 |