RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g47440.3 View Network Show in Genome Browser |
| Other Names | Os02g0702800 |
| Description | syntaxin, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 28967583-28971989 Nucleotide Length: 519 |
| Protein-coding | LOC_Os02g47440 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009653 | anatomical structure morphogenesis | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0009606 | tropism | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005768 | endosome | Cellular Component | IEA | |
| GO:0005794 | Golgi apparatus | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g24134 LOC_Os02g02720 LOC_Os01g73230 LOC_Os01g51120 LOC_Os01g37980 LOC_Os02g06490 LOC_Os02g25580 LOC_Os01g04840 LOC_Os01g64650 LOC_Os02g03450 LOC_Os01g47650 More.. |
| Downstream Genes | LOC_Os03g46390 LOC_Os08g17600 LOC_Os11g06740 LOC_Os04g14654 LOC_Os03g42320 LOC_Os12g43550 LOC_Os06g04450 LOC_Os08g44930 LOC_Os03g21990 LOC_Os02g57510 LOC_Os08g18110 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g47440.3 |
| Rice Genome Annotation | LOC_Os02g47440.3 |
| Ricechip | LOC_Os02g47440.3 |
| KEGG | osa:4330446 dosa:Os02t0702800-01 |
| Entrez-Gene | 4330446 |