RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g47870.1 View Network Show in Genome Browser |
| Other Names | Os02g0708300 |
| Description | anaphase-promoting complex subunit 11, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 29284949-29287589 Nucleotide Length: 345 |
| Protein-coding | LOC_Os02g47870 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g27160 LOC_Os01g27150 LOC_Os02g10640 LOC_Os02g42320 LOC_Os02g04100 LOC_Os01g16190 LOC_Os02g47410 LOC_Os01g59600 LOC_Os02g21970 LOC_Os01g32800 LOC_Os02g05340 More.. |
| Downstream Genes | LOC_Os11g26910 LOC_Os09g36830 LOC_Os05g05700 LOC_Os11g42160 LOC_Os11g48030 LOC_Os09g33986 LOC_Os06g07978 LOC_Os06g07878 LOC_Os06g07140 LOC_Os03g13970 LOC_Os11g40140 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR167d-5p osa-miR167e-5p osa-miR167f osa-miR167g osa-miR167h-5p osa-miR167i-5p osa-miR167j
|
| Database Links | |
|---|---|
| Gramene | LOC_Os02g47870.1 |
| Rice Genome Annotation | LOC_Os02g47870.1 |
| Ricechip | LOC_Os02g47870.1 |
| KEGG | osa:4330476 dosa:Os02t0708300-01 |
| Entrez-Gene | 4330476 |