RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g47970.1 View Network Show in Genome Browser |
| Other Names | Os02g0709400 |
| Description | calpain, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 29341254-29357891 Nucleotide Length: 6489 |
| Protein-coding | LOC_Os02g47970 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0030154 | cell differentiation | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g47410 LOC_Os01g44130 LOC_Os01g63800 LOC_Os01g16930 LOC_Os01g59340 LOC_Os01g73310 LOC_Os02g04660 |
| Downstream Genes | LOC_Os05g49200 LOC_Os04g24530 LOC_Os03g51140 LOC_Os04g33900 LOC_Os12g18760 LOC_Os05g01600 LOC_Os10g01380 LOC_Os04g55420 LOC_Os07g01310 LOC_Os05g06260 LOC_Os11g06390 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR3979-5p |
| Reference | |
|---|---|
| PubMed | 19473328 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g47970.1 |
| Rice Genome Annotation | LOC_Os02g47970.1 |
| Ricechip | LOC_Os02g47970.1 |
| KEGG | osa:4330484 dosa:Os02t0709400-01 |
| Entrez-Gene | 4330484 |