RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g48000.1 View Network Show in Genome Browser |
| Other Names | Os02g0709800 |
| Description | TBC domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 29373018-29381091 Nucleotide Length: 2040 |
| Protein-coding | LOC_Os02g48000 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0030234 | enzyme regulator activity | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g12730 LOC_Os01g54590 LOC_Os02g36924 LOC_Os01g47730 LOC_Os01g51700 LOC_Os01g62080 LOC_Os01g62950 |
| Downstream Genes | LOC_Os08g40620 LOC_Os09g34040 LOC_Os08g19850 LOC_Os06g35814 LOC_Os07g31370 LOC_Os03g09140 LOC_Os08g33488 LOC_Os02g52340 LOC_Os07g09680 LOC_Os05g44070 LOC_Os04g54940 More.. |
| Reference | |
|---|---|
| PubMed | 16230331 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g48000.1 |
| Rice Genome Annotation | LOC_Os02g48000.1 |
| Ricechip | LOC_Os02g48000.1 |
| KEGG | osa:4330486 dosa:Os02t0709800-01 |
| Entrez-Gene | 4330486 |