RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g49150.1 View Network Show in Genome Browser |
| Other Names | Os02g0723300 |
| Description | RNA polymerase Rpb4, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 30053464-30058543 Nucleotide Length: 720 |
| Protein-coding | LOC_Os02g49150 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0007049 | cell cycle | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006259 | DNA metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0040029 | regulation of gene expression, epigenetic | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005654 | nucleoplasm | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g59140 LOC_Os01g56550 LOC_Os01g56000 LOC_Os01g59860 |
| Downstream Genes | LOC_Os04g02150 LOC_Os03g01230 LOC_Os09g02284 LOC_Os05g05860 LOC_Os07g07610 LOC_Os05g33240 LOC_Os05g04330 LOC_Os02g53230 LOC_Os07g43060 LOC_Os10g10990 LOC_Os03g44484 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR1863c |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g49150.1 |
| Rice Genome Annotation | LOC_Os02g49150.1 |
| Ricechip | LOC_Os02g49150.1 |
| KEGG | osa:4330570 dosa:Os02t0723300-01 |
| Entrez-Gene | 4330570 |