RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g51830.1 View Network Show in Genome Browser |
| Other Names | Os02g0754700,Os02g0754650 |
| Description | tRNA synthetase class II core domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 31748768-31754456 Nucleotide Length: 1464 |
| Protein-coding | LOC_Os02g51830 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g06020 LOC_Os02g33500 LOC_Os02g41470 LOC_Os02g47120 LOC_Os01g14040 |
| Downstream Genes | LOC_Os07g07060 LOC_Os03g10190 LOC_Os08g19850 LOC_Os08g42560 LOC_Os12g25710 LOC_Os05g06920 LOC_Os07g42160 LOC_Os09g27050 LOC_Os08g35620 LOC_Os03g04169 LOC_Os05g06940 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 |
| Metacyc Pathways | TRNA-CHARGING-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g51830.1 |
| Rice Genome Annotation | LOC_Os02g51830.1 |
| Ricechip | LOC_Os02g51830.1 |
| KEGG | osa:4330767 dosa:Os02t0754700-01dosa:Os02t0754650-00 |
| Entrez-Gene | 4330767 |