RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g53340.1 View Network Show in Genome Browser |
| Other Names | Os02g0773400 |
| Description | cyclic nucleotide-gated ion channel, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 32648606-32659775 Nucleotide Length: 2319 |
| Protein-coding | LOC_Os02g53340 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0009607 | response to biotic stimulus | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g48680 LOC_Os02g14840 LOC_Os02g46090 LOC_Os02g15580 LOC_Os02g41710 LOC_Os02g03410 LOC_Os01g61590 LOC_Os01g59360 LOC_Os01g57370 LOC_Os01g43410 LOC_Os01g09200 More.. |
| Downstream Genes | LOC_Os04g37904 LOC_Os07g01810 LOC_Os10g30540 LOC_Os04g44910 LOC_Os04g44900 LOC_Os03g54100 LOC_Os05g48930 LOC_Os11g07040 LOC_Os12g07230 LOC_Os12g30150 LOC_Os03g57450 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g53340.1 |
| Rice Genome Annotation | LOC_Os02g53340.1 |
| Ricechip | LOC_Os02g53340.1 |
| KEGG | osa:4330882 dosa:Os02t0773400-01 |
| Entrez-Gene | 4330882 |