RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g53500.2 View Network Show in Genome Browser |
| Other Names | Os02g0775200,Os02g0775050 |
| Description | RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 32723377-32727558 Nucleotide Length: 1086 |
| Protein-coding | LOC_Os02g53500 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g08380 LOC_Os02g03340 LOC_Os02g30800 LOC_Os01g49680 LOC_Os02g20430 LOC_Os02g21970 LOC_Os01g56600 LOC_Os02g42230 LOC_Os02g37420 LOC_Os02g08490 LOC_Os01g62230 More.. |
| Downstream Genes | LOC_Os03g57870 LOC_Os04g48060 LOC_Os12g07720 LOC_Os11g36390 LOC_Os02g56130 LOC_Os03g13850 LOC_Os03g15810 LOC_Os02g58220 LOC_Os05g48030 LOC_Os04g42990 LOC_Os03g03650 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g53500.2 |
| Rice Genome Annotation | LOC_Os02g53500.2 |
| Ricechip | LOC_Os02g53500.2 |
| KEGG | osa:4330895 dosa:Os02t0775200-01dosa:Os02t0775050-00 |
| Entrez-Gene | 4330895 |