RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g53770.1 View Network Show in Genome Browser |
| Other Names | Os02g0778200 |
| Description | tRNA synthetase class I, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 32934144-32945156 Nucleotide Length: 3177 |
| Protein-coding | LOC_Os02g53770 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009908 | flower development | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006412 | translation | Biological Process | IEA | |
| GO:0005488 | binding | Molecular Function | IEA | |
| GO:0003824 | catalytic activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g12800 LOC_Os02g12794 LOC_Os01g48690 LOC_Os02g02860 LOC_Os01g54020 LOC_Os01g31610 LOC_Os01g68324 LOC_Os01g54390 LOC_Os02g32160 LOC_Os02g34690 LOC_Os02g03440 More.. |
| Downstream Genes | LOC_Os03g58710 LOC_Os06g37440 LOC_Os03g52180 LOC_Os03g52170 LOC_Os06g31210 LOC_Os09g21110 LOC_Os05g07030 LOC_Os09g32650 LOC_Os09g38420 LOC_Os03g11120 LOC_Os10g26050 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR3979-3p |
| Pathways | |
|---|---|
| KEGG Pathways | rn00970 |
| Metacyc Pathways | TRNA-CHARGING-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g53770.1 |
| Rice Genome Annotation | LOC_Os02g53770.1 |
| Ricechip | LOC_Os02g53770.1 |
| KEGG | osa:4330908 dosa:Os02t0778200-01 |
| Entrez-Gene | 4330908 |