RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g54160.1 View Network Show in Genome Browser |
| Other Names | Os02g0782700 |
| Description | AP2 domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 33199804-33202684 Nucleotide Length: 1098 |
| Protein-coding | LOC_Os02g54160 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g52010 LOC_Os01g51980 LOC_Os01g37630 LOC_Os01g25360 LOC_Os02g19150 |
| Downstream Genes | LOC_Os03g53300 LOC_Os10g21910 LOC_Os09g04440 LOC_Os03g32270 LOC_Os03g63660 LOC_Os06g47890 LOC_Os03g31490 LOC_Os06g45480 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g54160.1 |
| Rice Genome Annotation | LOC_Os02g54160.1 |
| Ricechip | LOC_Os02g54160.1 |
| KEGG | osa:4330935 dosa:Os02t0782700-01 |
| Entrez-Gene | 4330935 |