RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g54540.1 View Network Show in Genome Browser |
| Other Names | Os02g0786500 |
| Description | SCP-like extracellular protein, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 33408068-33408586 Nucleotide Length: 519 |
| Protein-coding | LOC_Os02g54540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005623 | cell | Cellular Component | IEA | |
| GO:0005576 | extracellular region | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g40340 LOC_Os01g59930 LOC_Os01g27630 LOC_Os01g27210 |
| Downstream Genes | LOC_Os05g51490 LOC_Os04g52940 LOC_Os04g55410 LOC_Os12g15400 LOC_Os08g39694 LOC_Os07g26870 LOC_Os03g14400 LOC_Os10g05660 LOC_Os09g36560 LOC_Os08g43510 LOC_Os05g33050 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR159a.2 osa-miR5075 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g54540.1 |
| Rice Genome Annotation | LOC_Os02g54540.1 |
| Ricechip | LOC_Os02g54540.1 |
| KEGG | osa:4330952 dosa:Os02t0786500-01 |
| Entrez-Gene | 4330952 |