RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g54910.1 View Network Show in Genome Browser |
| Other Names | Os02g0791800 |
| Description | atATG18b, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 33629327-33633614 Nucleotide Length: 1125 |
| Protein-coding | LOC_Os02g54910 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0008150 | biological_process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0007154 | cell communication | Biological Process | IEA | |
| GO:0009991 | response to extracellular stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0008289 | lipid binding | Molecular Function | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g29409 LOC_Os01g53700 LOC_Os01g40340 LOC_Os01g73550 LOC_Os01g51390 LOC_Os02g32430 LOC_Os02g14790 LOC_Os02g04320 LOC_Os01g69970 LOC_Os02g42590 |
| Downstream Genes | LOC_Os03g28140 LOC_Os10g07994 LOC_Os08g33082 LOC_Os03g14380 LOC_Os03g24170 LOC_Os08g34950 LOC_Os07g46490 LOC_Os03g24160 LOC_Os05g44916 LOC_Os12g04700 LOC_Os11g04840 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5821 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g54910.1 |
| Rice Genome Annotation | LOC_Os02g54910.1 |
| Ricechip | LOC_Os02g54910.1 |
| KEGG | osa:4330978 dosa:Os02t0791800-01 |
| Entrez-Gene | 4330978 |