RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g55380.1 View Network Show in Genome Browser |
| Other Names | Os02g0797100 |
| Description | AP2 domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 33920240-33921018 Nucleotide Length: 519 |
| Protein-coding | LOC_Os02g55380 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0003677 | DNA binding | Molecular Function | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g27140 |
| Downstream Genes | LOC_Os05g31280 LOC_Os09g38540 LOC_Os12g35330 LOC_Os08g06280 LOC_Os08g02520 |
| Reference | |
|---|---|
| PubMed | 22130861 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g55380.1 |
| Rice Genome Annotation | LOC_Os02g55380.1 |
| Ricechip | LOC_Os02g55380.1 |
| KEGG | osa:4331013 dosa:Os02t0797100-00 |
| Entrez-Gene | 4331013 |