RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g55980.1 View Network Show in Genome Browser |
| Other Names | Os02g0803400 |
| Description | vacuolar protein sorting 55 family protein, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 34259963-34263088 Nucleotide Length: 411 |
| Protein-coding | LOC_Os02g55980 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0005215 | transporter activity | Molecular Function | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g48840 LOC_Os01g72280 LOC_Os02g21460 LOC_Os01g66720 LOC_Os01g44130 LOC_Os01g62870 LOC_Os01g05810 |
| Downstream Genes | LOC_Os06g20340 LOC_Os05g31770 LOC_Os11g17610 LOC_Os04g41960 LOC_Os04g38450 LOC_Os03g24060 LOC_Os03g53400 LOC_Os12g12580 LOC_Os12g12590 LOC_Os12g12470 LOC_Os12g12560 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR395f |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g55980.1 |
| Rice Genome Annotation | LOC_Os02g55980.1 |
| Ricechip | LOC_Os02g55980.1 |
| KEGG | osa:4331048 dosa:Os02t0803400-01 |
| Entrez-Gene | 4331048 |