RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g56000.1 View Network Show in Genome Browser |
| Other Names | Os02g0803700 |
| Description | 26S protease regulatory subunit 6A, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 34265964-34269935 Nucleotide Length: 1290 |
| Protein-coding | LOC_Os02g56000 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0007275 | multicellular organismal development | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0019538 | protein metabolic process | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005737 | cytoplasm | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005622 | intracellular | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g21970 LOC_Os01g16190 LOC_Os02g05340 LOC_Os01g32800 LOC_Os02g10640 LOC_Os02g11050 LOC_Os02g54340 LOC_Os02g38810 LOC_Os01g42850 LOC_Os02g16670 LOC_Os01g36930 More.. |
| Downstream Genes | LOC_Os05g30800 LOC_Os07g49150 LOC_Os04g36700 LOC_Os03g63430 LOC_Os04g40850 LOC_Os03g11570 LOC_Os07g25420 LOC_Os03g18690 LOC_Os06g48640 LOC_Os09g15750 LOC_Os06g40560 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR160a-3p osa-miR160b-3p |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g56000.1 |
| Rice Genome Annotation | LOC_Os02g56000.1 |
| Ricechip | LOC_Os02g56000.1 |
| KEGG | osa:4331050 dosa:Os02t0803700-01 |
| Entrez-Gene | 4331050 |