RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g56300.1 View Network Show in Genome Browser |
| Other Names | Os02g0806900 |
| Description | aminotransferase, classes I and II, domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 34463030-34467135 Nucleotide Length: 1446 |
| Protein-coding | LOC_Os02g56300 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0016049 | cell growth | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0005783 | endoplasmic reticulum | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g70380 LOC_Os01g70370 LOC_Os01g70360 LOC_Os02g46130 LOC_Os02g14110 LOC_Os01g19840 LOC_Os01g09700 LOC_Os02g34690 LOC_Os02g47940 LOC_Os02g12740 LOC_Os01g53450 More.. |
| Downstream Genes | LOC_Os11g31640 LOC_Os07g42600 LOC_Os12g03960 LOC_Os08g43190 LOC_Os07g01760 LOC_Os05g28750 LOC_Os04g48850 LOC_Os03g51740 LOC_Os06g03990 LOC_Os10g25130 LOC_Os09g28050 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00600 rn01100 rn00780 |
| Metacyc Pathways | SPHINGOLIPID-SYN-PWY PWY-3701 BIOTIN-SYNTHESIS-PWY |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g56300.1 |
| Rice Genome Annotation | LOC_Os02g56300.1 |
| Ricechip | LOC_Os02g56300.1 |
| KEGG | osa:4331075 dosa:Os02t0806900-01 |
| Entrez-Gene | 4331075 |