RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os02g57260.1 View Network Show in Genome Browser |
| Other Names | Os02g0817700 |
| Description | 3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed |
| Gene Attributes | Chromosome: Chr2 CDS Coordinates (5'-3'): 35080879-35085201 Nucleotide Length: 1347 |
| Protein-coding | LOC_Os02g57260 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006629 | lipid metabolic | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0009719 | response to endogenous stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0007165 | signal transduction | Biological Process | IEA | |
| GO:0016740 | transferase activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005739 | mitochondrion | Cellular Component | IEA | |
| GO:0005730 | nucleolus | Cellular Component | IEA | |
| GO:0005777 | peroxisome | Cellular Component | IEA | |
| GO:0009536 | plastid | Cellular Component | IEA | |
| GO:0005773 | vacuole | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g14790 LOC_Os01g24680 LOC_Os01g37910 LOC_Os02g09940 LOC_Os02g30060 LOC_Os02g17390 LOC_Os02g02400 LOC_Os01g46610 LOC_Os01g47760 LOC_Os01g59790 LOC_Os01g14580 More.. |
| Downstream Genes | LOC_Os06g42000 LOC_Os06g01390 LOC_Os11g04954 LOC_Os12g04980 LOC_Os05g48930 LOC_Os11g40150 LOC_Os04g30760 LOC_Os08g44240 LOC_Os12g31370 LOC_Os06g51150 LOC_Os05g29880 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR2097-3p |
| Pathways | |
|---|---|
| KEGG Pathways | rn00280 rn01100 rn01110 rn00062 rn00071 rn00360 rn00362 rn01120 rn01040 |
| Database Links | |
|---|---|
| Gramene | LOC_Os02g57260.1 |
| Rice Genome Annotation | LOC_Os02g57260.1 |
| Ricechip | LOC_Os02g57260.1 |
| KEGG | osa:4331150 dosa:Os02t0817700-02 |
| Entrez-Gene | 4331150 |