RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g01120.1 View Network Show in Genome Browser |
| Other Names | Os03g0100800 |
| Description | E1-E2 ATPase domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 89042-99403 Nucleotide Length: 2913 |
| Protein-coding | LOC_Os03g01120 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009056 | catabolic process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0006810 | transport | Biological Process | IEA | |
| GO:0016787 | hydrolase activity | Molecular Function | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0005886 | plasma membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g04320 LOC_Os02g55400 LOC_Os02g07830 LOC_Os01g23620 LOC_Os01g55820 LOC_Os02g32690 LOC_Os02g02750 LOC_Os02g57100 LOC_Os02g33140 LOC_Os02g06700 LOC_Os02g45344 More.. |
| Downstream Genes | LOC_Os04g56160 LOC_Os12g44150 LOC_Os07g09340 LOC_Os03g48310 LOC_Os05g25550 LOC_Os06g08310 LOC_Os03g08560 LOC_Os11g24560 LOC_Os04g04020 LOC_Os04g51820 LOC_Os12g37360 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn01100 rn00680 rn00190 rn00195 |
| Metacyc Pathways | PWY-6126 |
| Reference | |
|---|---|
| PubMed | 19047499 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g01120.1 |
| Rice Genome Annotation | LOC_Os03g01120.1 |
| Ricechip | LOC_Os03g01120.1 |
| KEGG | osa:4331281 dosa:Os03t0100800-01 |
| Entrez-Gene | 4331281 |