RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g01240.1 View Network Show in Genome Browser |
| Other Names | Os03g0102366,Os03g0102300,Os03g0102333 |
| Description | CCR4-Not complex component, Not1domain containing protein, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 152358-170125 Nucleotide Length: 6240 |
| Protein-coding | LOC_Os03g01240 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| GO:0016020 | membrane | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g55300 LOC_Os02g54120 LOC_Os02g17700 LOC_Os02g07750 LOC_Os01g51170 LOC_Os01g63940 LOC_Os02g37430 LOC_Os02g42860 |
| Downstream Genes | LOC_Os03g07080 LOC_Os10g27230 LOC_Os07g37790 LOC_Os04g52340 LOC_Os12g01190 LOC_Os03g52594 LOC_Os09g24990 LOC_Os03g57130 LOC_Os08g34170 LOC_Os08g12820 LOC_Os12g39070 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR5161 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g01240.1 |
| Rice Genome Annotation | LOC_Os03g01240.1 |
| Ricechip | LOC_Os03g01240.1 |
| KEGG | osa:4331296 dosa:Os03t0102366-00dosa:Os03t0102300-00dosa:Os03t0102333-00 |
| Entrez-Gene | 4345541 |