RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g01970.1 View Network Show in Genome Browser |
| Other Names | Os03g0110400 |
| Description | THO complex subunit 1, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 602461-609356 Nucleotide Length: 1917 |
| Protein-coding | LOC_Os03g01970 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0040029 | regulation of gene expression, epigenetic | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g57630 LOC_Os02g05310 LOC_Os02g11750 LOC_Os01g54240 LOC_Os01g51154 LOC_Os01g12720 LOC_Os01g54700 LOC_Os01g02040 LOC_Os01g53640 LOC_Os02g25960 LOC_Os02g29140 More.. |
| Downstream Genes | LOC_Os07g40800 LOC_Os07g29360 LOC_Os11g36390 LOC_Os09g12710 LOC_Os04g54840 LOC_Os05g22260 LOC_Os03g17010 LOC_Os04g35910 LOC_Os08g04280 LOC_Os05g12680 LOC_Os05g01310 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR7693-5p |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g01970.1 |
| Rice Genome Annotation | LOC_Os03g01970.1 |
| Ricechip | LOC_Os03g01970.1 |
| KEGG | osa:4331353 dosa:Os03t0110400-01 |
| Entrez-Gene | 4331353 |