RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g02200.1 View Network Show in Genome Browser |
| Other Names | Os03g0113100 |
| Description | thymidine kinase, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 736183-739882 Nucleotide Length: 834 |
| Protein-coding | LOC_Os03g02200 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0009987 | cellular process | Biological Process | IEA | |
| GO:0006091 | generation of precursor metabolites and energy | Biological Process | IEA | |
| GO:0008152 | metabolic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0016301 | kinase activity | Molecular Function | IEA | |
| GO:0000166 | nucleotide binding | Molecular Function | IEA | |
| GO:0005575 | cellular_component | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os02g03060 LOC_Os01g14610 LOC_Os01g16650 LOC_Os01g36920 LOC_Os01g36890 LOC_Os02g47150 LOC_Os01g63710 LOC_Os02g07060 LOC_Os02g49986 LOC_Os02g04240 LOC_Os02g56130 More.. |
| Downstream Genes | LOC_Os07g44630 LOC_Os06g14670 LOC_Os11g40150 LOC_Os07g32390 LOC_Os04g18010 LOC_Os07g03160 LOC_Os04g10650 LOC_Os05g46270 LOC_Os07g32480 LOC_Os12g31370 LOC_Os06g46000 More.. |
| Pathways | |
|---|---|
| KEGG Pathways | rn00240 rn01100 rn00983 |
| Metacyc Pathways | P1-PWY PWY0-181 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g02200.1 |
| Rice Genome Annotation | LOC_Os03g02200.1 |
| Ricechip | LOC_Os03g02200.1 |
| KEGG | osa:4331376 dosa:Os03t0113100-01 |
| Entrez-Gene | 4331376 |