RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g02240.1 View Network Show in Genome Browser |
| Other Names | Os03g0113500 |
| Description | AT-GTL1, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 752024-756170 Nucleotide Length: 2178 |
| Protein-coding | LOC_Os03g02240 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0009058 | biosynthetic process | Biological Process | IEA | |
| GO:0006139 | nucleobase, nucleoside, nucleotide and nucleic acid metabolic process | Biological Process | IEA | |
| GO:0003700 | sequence-specific DNA binding transcription factor activity | Molecular Function | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g11710 LOC_Os01g47780 LOC_Os02g43660 LOC_Os02g18410 LOC_Os01g59150 LOC_Os01g72700 LOC_Os01g63770 LOC_Os01g68589 LOC_Os01g25560 LOC_Os02g58720 LOC_Os01g04720 More.. |
| Downstream Genes | LOC_Os09g36860 LOC_Os05g04820 LOC_Os06g06250 LOC_Os11g44810 LOC_Os05g41990 LOC_Os06g09630 LOC_Os12g08170 LOC_Os10g37240 LOC_Os03g45920 LOC_Os11g30560 LOC_Os12g40890 More.. |
| miRNA Regulations | |
|---|---|
| miRNAs | osa-miR159a.2 |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g02240.1 |
| Rice Genome Annotation | LOC_Os03g02240.1 |
| Ricechip | LOC_Os03g02240.1 |
| KEGG | osa:4331378 dosa:Os03t0113500-01 |
| Entrez-Gene | 4331378 |