RiceNetDB is currently the most comprehensive regulatory database on Oryza Sativa based on genome annotation. It was displayed in three levels: GEM, PPIs and GRNs to facilitate biomolecular regulatory analysis and gene-metabolite mapping.
| General Information | |
|---|---|
| Locus Name | LOC_Os03g02540.1 View Network Show in Genome Browser |
| Other Names | Os03g0116500 |
| Description | proteasome subunit, putative, expressed |
| Gene Attributes | Chromosome: Chr3 CDS Coordinates (5'-3'): 935043-939214 Nucleotide Length: 1326 |
| Protein-coding | LOC_Os03g02540 |
| Gene Ontology Classification | ||||
|---|---|---|---|---|
| GO | Name | Type | Code | |
| GO:0016043 | cellular component organization | Biological Process | IEA | |
| GO:0009790 | embryo development | Biological Process | IEA | |
| GO:0009791 | post-embryonic development | Biological Process | IEA | |
| GO:0006464 | protein modification process | Biological Process | IEA | |
| GO:0000003 | reproduction | Biological Process | IEA | |
| GO:0009628 | response to abiotic stimulus | Biological Process | IEA | |
| GO:0006950 | response to stress | Biological Process | IEA | |
| GO:0003674 | molecular_function | Molecular Function | IEA | |
| GO:0005515 | protein binding | Molecular Function | IEA | |
| GO:0005829 | cytosol | Cellular Component | IEA | |
| GO:0005634 | nucleus | Cellular Component | IEA | |
| Regulatory Genes ( Show Network In Viewer ) | |
|---|---|
| Upstream Genes | LOC_Os01g03070 LOC_Os02g07120 LOC_Os01g32800 LOC_Os01g13700 LOC_Os02g27960 LOC_Os01g62040 LOC_Os02g47870 LOC_Os02g51180 LOC_Os02g39890 LOC_Os01g16540 LOC_Os01g12880 More.. |
| Downstream Genes | LOC_Os08g02550 LOC_Os07g30840 LOC_Os03g10120 LOC_Os03g11570 LOC_Os07g12110 LOC_Os03g63430 LOC_Os09g34970 LOC_Os07g03230 LOC_Os09g37000 LOC_Os08g39070 LOC_Os12g26044 More.. |
| Database Links | |
|---|---|
| Gramene | LOC_Os03g02540.1 |
| Rice Genome Annotation | LOC_Os03g02540.1 |
| Ricechip | LOC_Os03g02540.1 |
| KEGG | osa:4331403 dosa:Os03t0116500-01 |
| Entrez-Gene | 4331403 |